PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0037s0104.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 101aa    MW: 11266.7 Da    PI: 9.6587
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0037s0104.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.21.7e-144623597
                         EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                          ++l+ +s+++W+v    ++  + ++ ++GW eFv+++ L+e  f+vF+++g+s+f  +v +f
  Kaladp0037s0104.1.p  4 RIRLKGPSSNKWKVGS--ERAEKDVIVGRGWAEFVSDQSLDESNFLVFHYTGDSSF--KVLIF 62
                         599*************..***********************************999..66655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.746165IPR003340B3 DNA binding domain
CDDcd100172.99E-9262No hitNo description
SuperFamilySSF1019368.44E-14270IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-14367IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-11461IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MGNRIRLKGP SSNKWKVGSE RAEKDVIVGR GWAEFVSDQS LDESNFLVFH YTGDSSFKVL  60
IFYLSGCEKE SSHFVKPTDR SSSVRALLLT PTDIKNQNPK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047110.14e-18Thioredoxin superfamily protein isoform 2
TrEMBLA0A061DGN95e-18A0A061DGN9_THECC; Thioredoxin superfamily protein isoform 2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-13B3 family protein